PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf09562g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 212aa    MW: 23685.4 Da    PI: 6.6804
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf09562g00002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.24.4e-231563249
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.EEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.klyey 49
                              +ien sn qvtfskRr+g++KKA+ELS+LC+aeva++ f+++g k+y +
  Peinf101Scf09562g00002.1 15 KIENASNLQVTFSKRREGLFKKASELSTLCGAEVAILAFAPNGnKVYSF 63
                              79***************************************98356655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-29666IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.595657IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-26795IPR002100Transcription factor, MADS-box
CDDcd002656.98E-32776No hitNo description
PRINTSPR004041.1E-16828IPR002100Transcription factor, MADS-box
PfamPF003192.2E-231563IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-162843IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-164364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MPRKSAGRKK VKMAKIENAS NLQVTFSKRR EGLFKKASEL STLCGAEVAI LAFAPNGNKV  60
YSFGHPCANE IMDRYLARNP PNDETNNNNV NNELIEAFRN SSISDITNEL NQKEHELEME  120
RKRGEALQAV RKSKEACQHN WWETPIKKLN YDQVQQVKEA LEELHDIVES EAEHQMVNEN  180
AAFPFKNFGS ALSPGINFDS NGASGSGSTA SN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-157103293Myocyte-specific enhancer factor 2B
1tqe_Q7e-157103293Myocyte-specific enhancer factor 2B
1tqe_R7e-157103293Myocyte-specific enhancer factor 2B
1tqe_S7e-157103293Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779105.11e-66PREDICTED: agamous-like MADS-box protein AGL62
RefseqXP_016493006.11e-66PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLK4B2P03e-63K4B2P0_SOLLC; Uncharacterized protein
STRINGSolyc01g106730.1.18e-63(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2521322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-45AGAMOUS-like 62